Detailed information of SNP:
|
SNP ID:
sf0604358244(Gbrowse)
Chromosome: chr06 Position: 4358244 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 89.18% | 10.82% |
| All Indica | 797 | 94.60% | 5.40% |
| All Japonica | 495 | 81.21% | 18.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 34.78% | 65.22% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604358244 | G->A | INTERGENIC | None |