Detailed information of SNP:
|
SNP ID:
sf0604368776(Gbrowse)
Chromosome: chr06 Position: 4368776 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 54.73% | 45.27% |
| All Indica | 785 | 48.28% | 51.72% |
| All Japonica | 497 | 74.45% | 25.55% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 371 | 61.46% | 38.54% |
| Indica II | 208 | 46.63% | 53.37% |
| Indica Intermediate | 206 | 26.21% | 73.79% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604368776 | T->C | LOC_Os06g08730(LOC_Os06g08730.1) | INTRON |