Detailed information of SNP:
|
SNP ID:
sf0604372918(Gbrowse)
Chromosome: chr06 Position: 4372918 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.89% | 13.11% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 64.99% | 35.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 56.12% | 43.88% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604372918 | T->C | LOC_Os06g08740(LOC_Os06g08740.1) | INTRON |
| sf0604372918 | T->C | LOC_Os06g08740(LOC_Os06g08740.2) | INTRON |