Detailed information of SNP:
|
SNP ID:
sf0604417263(Gbrowse)
Chromosome: chr06 Position: 4417263 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 72.97% | 27.03% |
| All Indica | 797 | 74.28% | 25.72% |
| All Japonica | 497 | 74.25% | 25.75% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604417263 | G->A | INTERGENIC | None |