Detailed information of SNP:
|
SNP ID:
sf0604428482(Gbrowse)
Chromosome: chr06 Position: 4428482 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 87.53% | 12.47% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 67.00% | 33.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604428482 | G->T | LOC_Os06g08840(LOC_Os06g08840.8) | INTRON |
| sf0604428482 | G->T | LOC_Os06g08840(LOC_Os06g08840.7) | INTRON |
| sf0604428482 | G->T | LOC_Os06g08840(LOC_Os06g08840.6) | INTRON |
| sf0604428482 | G->T | LOC_Os06g08840(LOC_Os06g08840.5) | INTRON |
| sf0604428482 | G->T | LOC_Os06g08840(LOC_Os06g08840.4) | INTRON |
| sf0604428482 | G->T | LOC_Os06g08840(LOC_Os06g08840.1) | INTRON |
| sf0604428482 | G->T | LOC_Os06g08840(LOC_Os06g08840.3) | INTRON |
| sf0604428482 | G->T | LOC_Os06g08840(LOC_Os06g08840.2) | INTRON |