Detailed information of SNP:
|
SNP ID:
sf0604435989(Gbrowse)
Chromosome: chr06 Position: 4435989 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 81.91% | 18.09% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 493 | 76.27% | 23.73% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 331 | 68.28% | 31.72% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604435989 | A->G | INTERGENIC | None |