Detailed information of SNP:
|
SNP ID:
sf0604438759(Gbrowse)
Chromosome: chr06 Position: 4438759 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.77% | 34.23% |
| All Indica | 798 | 82.08% | 17.92% |
| All Japonica | 497 | 47.08% | 52.92% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 61.49% | 38.51% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604438759 | C->T | LOC_Os06g08850(LOC_Os06g08850.2) | INTRON |
| sf0604438759 | C->T | LOC_Os06g08850(LOC_Os06g08850.1) | INTRON |