Detailed information of SNP:
|
SNP ID:
sf0604501627(Gbrowse)
Chromosome: chr06 Position: 4501627 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1347 | 92.50% | 7.50% |
| All Indica | 797 | 93.22% | 6.78% |
| All Japonica | 433 | 90.53% | 9.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 328 | 98.48% | 1.52% |
| Tropical Japonica | 59 | 54.24% | 45.76% |
| Japonica Intermediate | 46 | 80.43% | 19.57% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604501627 | C->T | LOC_Os06g08930(LOC_Os06g08930.1) | Non-Synonymous SNP |