Detailed information of SNP:
|
SNP ID:
sf0604516237(Gbrowse)
Chromosome: chr06 Position: 4516237 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 86.38% | 13.62% |
| All Indica | 783 | 95.15% | 4.85% |
| All Japonica | 494 | 72.67% | 27.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 197 | 82.23% | 17.77% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 91 | 15.38% | 84.62% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604516237 | G->C | LOC_Os06g08960(LOC_Os06g08960.1) | Non-Synonymous SNP |