Detailed information of SNP:
|
SNP ID:
sf0604525919(Gbrowse)
Chromosome: chr06 Position: 4525919 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 82.58% | 17.42% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 73.84% | 26.16% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604525919 | A->G | LOC_Os06g08970(LOC_Os06g08970.1) | INTRON |