Detailed information of SNP:
|
SNP ID:
sf0604549201(Gbrowse)
Chromosome: chr06 Position: 4549201 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.41% | 10.59% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 71.72% | 28.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 92 | 67.39% | 32.61% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604549201 | C->T | INTERGENIC | None |