Detailed information of SNP:
|
SNP ID:
sf0604585644(Gbrowse)
Chromosome: chr06 Position: 4585644 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.20% | 45.80% |
| All Indica | 798 | 87.84% | 12.16% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604585644 | T->C | INTERGENIC | None |