Detailed information of SNP:
|
SNP ID:
sf0604637831(Gbrowse)
Chromosome: chr06 Position: 4637831 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.59% | 45.41% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 494 | 13.56% | 86.44% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 332 | 3.92% | 96.08% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604637831 | G->A | INTERGENIC | None |