Detailed information of SNP:
|
SNP ID:
sf0604640321(Gbrowse)
Chromosome: chr06 Position: 4640321 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 50.71% | 49.29% |
| All Indica | 799 | 73.72% | 26.28% |
| All Japonica | 492 | 10.57% | 89.43% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 331 | 3.93% | 96.07% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604640321 | C->T | LOC_Os06g09230(LOC_Os06g09230.2) | INTRON |