Detailed information of SNP:
|
SNP ID:
sf0604701912(Gbrowse)
Chromosome: chr06 Position: 4701912 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 95.43% | 4.57% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 436 | 95.41% | 4.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 289 | 95.16% | 4.84% |
| Tropical Japonica | 90 | 95.56% | 4.44% |
| Japonica Intermediate | 57 | 96.49% | 3.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604701912 | G->C | LOC_Os06g09340(LOC_Os06g09340.1) | Non-Synonymous SNP |