Detailed information of SNP:
|
SNP ID:
sf0604721111(Gbrowse)
Chromosome: chr06 Position: 4721111 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 88.41% | 11.59% |
| All Indica | 761 | 79.50% | 20.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 67.13% | 32.87% |
| Indica II | 207 | 94.20% | 5.80% |
| Indica Intermediate | 198 | 86.36% | 13.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604721111 | C->T | INTERGENIC | None |