Detailed information of SNP:
|
SNP ID:
sf0604725688(Gbrowse)
Chromosome: chr06 Position: 4725688 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.31% | 17.69% |
| All Indica | 799 | 84.48% | 15.52% |
| All Japonica | 497 | 74.45% | 25.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 68.36% | 31.64% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604725688 | A->G | INTERGENIC | None |