Detailed information of SNP:
|
SNP ID:
sf0604785257(Gbrowse)
Chromosome: chr06 Position: 4785257 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.53% | 24.47% |
| All Indica | 798 | 59.90% | 40.10% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 50.00% | 50.00% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604785257 | G->A | INTERGENIC | None |