Detailed information of SNP:
|
SNP ID:
sf0604839271(Gbrowse)
Chromosome: chr06 Position: 4839271 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 51.88% | 48.12% |
| All Indica | 792 | 71.97% | 28.03% |
| All Japonica | 497 | 18.71% | 81.29% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 372 | 57.80% | 42.20% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604839271 | A->G | INTERGENIC | None |