Detailed information of SNP:
|
SNP ID:
sf0604841469(Gbrowse)
Chromosome: chr06 Position: 4841469 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 94.98% | 5.02% |
| All Indica | 784 | 95.92% | 4.08% |
| All Japonica | 493 | 96.15% | 3.85% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 364 | 93.13% | 6.87% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604841469 | G->A | LOC_Os06g09530(LOC_Os06g09530.1) | Non-Synonymous SNP |