Detailed information of SNP:
|
SNP ID:
sf0604858045(Gbrowse)
Chromosome: chr06 Position: 4858045 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 82.03% | 17.97% |
| All Indica | 799 | 69.84% | 30.16% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604858045 | T->C | INTERGENIC | None |