Detailed information of SNP:
|
SNP ID:
sf0604864285(Gbrowse)
Chromosome: chr06 Position: 4864285 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 76.06% | 23.94% |
| All Indica | 797 | 59.97% | 40.03% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 52.14% | 47.86% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604864285 | A->G | INTERGENIC | None |