Detailed information of SNP:
|
SNP ID:
sf0604881319(Gbrowse)
Chromosome: chr06 Position: 4881319 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 88.81% | 11.19% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 491 | 71.89% | 28.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 64.76% | 35.24% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604881319 | A->G | INTERGENIC | None |