Detailed information of SNP:
|
SNP ID:
sf0604918054(Gbrowse)
Chromosome: chr06 Position: 4918054 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 63.91% | 36.09% |
| All Indica | 797 | 41.41% | 58.59% |
| All Japonica | 494 | 95.14% | 4.86% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 31.10% | 68.90% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604918054 | T->C | INTERGENIC | None |