Detailed information of SNP:
|
SNP ID:
sf0604923929(Gbrowse)
Chromosome: chr06 Position: 4923929 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 64.76% | 35.24% |
| All Indica | 796 | 42.21% | 57.79% |
| All Japonica | 494 | 96.36% | 3.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 32.71% | 67.29% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604923929 | G->A | INTERGENIC | None |