Detailed information of SNP:
|
SNP ID:
sf0604987140(Gbrowse)
Chromosome: chr06 Position: 4987140 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 59.86% | 40.14% |
| All Indica | 796 | 42.34% | 57.66% |
| All Japonica | 493 | 83.37% | 16.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 49.73% | 50.27% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 209 | 37.32% | 62.68% |
| Temperate Japonica | 332 | 81.93% | 18.07% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0604987140 | T->G | INTERGENIC | None |