Detailed information of SNP:
|
SNP ID:
sf0605048750(Gbrowse)
Chromosome: chr06 Position: 5048750 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 77.70% | 22.30% |
| All Indica | 767 | 69.36% | 30.64% |
| All Japonica | 493 | 87.42% | 12.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 56.58% | 43.42% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 203 | 67.49% | 32.51% |
| Temperate Japonica | 331 | 83.08% | 16.92% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605048750 | A->G | INTERGENIC | None |