Detailed information of SNP:
|
SNP ID:
sf0605048952(Gbrowse)
Chromosome: chr06 Position: 5048952 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 74.79% | 25.21% |
| All Indica | 794 | 65.11% | 34.89% |
| All Japonica | 493 | 86.82% | 13.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 52.42% | 47.58% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 333 | 82.28% | 17.72% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605048952 | T->C | INTERGENIC | None |