Detailed information of SNP:
|
SNP ID:
sf0605104761(Gbrowse)
Chromosome: chr06 Position: 5104761 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 83.46% | 16.54% |
| All Indica | 787 | 71.54% | 28.46% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 55.50% | 44.50% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 205 | 79.02% | 20.98% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605104761 | T->G | INTERGENIC | None |