Detailed information of SNP:
|
SNP ID:
sf0605113475(Gbrowse)
Chromosome: chr06 Position: 5113475 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 96.35% | 3.65% |
| All Indica | 783 | 100.00% | 0.00% |
| All Japonica | 465 | 89.25% | 10.75% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 368 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 84.49% | 15.51% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605113475 | A->G | INTERGENIC | None |