Detailed information of SNP:
|
SNP ID:
sf0605125672(Gbrowse)
Chromosome: chr06 Position: 5125672 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.29% | 41.71% |
| All Indica | 797 | 60.60% | 39.40% |
| All Japonica | 497 | 50.91% | 49.09% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 52.53% | 47.47% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 209 | 66.99% | 33.01% |
| Temperate Japonica | 335 | 58.81% | 41.19% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605125672 | G->A | INTERGENIC | None |