Detailed information of SNP:
|
SNP ID:
sf0605145425(Gbrowse)
Chromosome: chr06 Position: 5145425 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.63% | 6.37% |
| All Indica | 794 | 96.73% | 3.27% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605145425 | G->A | INTERGENIC | None |