Detailed information of SNP:
|
SNP ID:
sf0605161590(Gbrowse)
Chromosome: chr06 Position: 5161590 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 57.60% | 42.40% |
| All Indica | 795 | 67.42% | 32.58% |
| All Japonica | 497 | 47.28% | 52.72% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 55.35% | 44.65% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605161590 | A->C | LOC_Os06g10109(LOC_Os06g10109.1) | INTRON |