Detailed information of SNP:
|
SNP ID:
sf0605169852(Gbrowse)
Chromosome: chr06 Position: 5169852 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 62.40% | 37.60% |
| All Indica | 796 | 66.83% | 33.17% |
| All Japonica | 496 | 52.02% | 47.98% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 53.08% | 46.92% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 334 | 57.19% | 42.81% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605169852 | T->C | INTERGENIC | None |