Detailed information of SNP:
|
SNP ID:
sf0605172998(Gbrowse)
Chromosome: chr06 Position: 5172998 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.50% | 38.50% |
| All Indica | 798 | 66.04% | 33.96% |
| All Japonica | 497 | 51.11% | 48.89% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 51.87% | 48.13% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 56.12% | 43.88% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605172998 | A->G | INTERGENIC | None |