Detailed information of SNP:
|
SNP ID:
sf0605178268(Gbrowse)
Chromosome: chr06 Position: 5178268 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 63.21% | 36.79% |
| All Indica | 797 | 67.13% | 32.87% |
| All Japonica | 497 | 53.92% | 46.08% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 52.94% | 47.06% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605178268 | C->G | INTERGENIC | None |