Detailed information of SNP:
|
SNP ID:
sf0605180591(Gbrowse)
Chromosome: chr06 Position: 5180591 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1359 | 70.93% | 29.07% |
| All Indica | 755 | 74.30% | 25.70% |
| All Japonica | 485 | 63.71% | 36.29% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 352 | 60.51% | 39.49% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 194 | 79.90% | 20.10% |
| Temperate Japonica | 327 | 70.95% | 29.05% |
| Tropical Japonica | 91 | 38.46% | 61.54% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605180591 | T->C | INTERGENIC | None |