Detailed information of SNP:
|
SNP ID:
sf0605204204(Gbrowse)
Chromosome: chr06 Position: 5204204 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 66.06% | 33.94% |
| All Indica | 797 | 73.40% | 26.60% |
| All Japonica | 497 | 52.11% | 47.89% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 59.09% | 40.91% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605204204 | T->C | INTERGENIC | None |