Detailed information of SNP:
|
SNP ID:
sf0605217849(Gbrowse)
Chromosome: chr06 Position: 5217849 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.00% | 28.00% |
| All Indica | 799 | 77.47% | 22.53% |
| All Japonica | 496 | 58.47% | 41.53% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 61.60% | 38.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 334 | 56.89% | 43.11% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605217849 | G->A | INTERGENIC | None |