Detailed information of SNP:
|
SNP ID:
sf0605273341(Gbrowse)
Chromosome: chr06 Position: 5273341 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 82.21% | 17.79% |
| All Indica | 793 | 76.80% | 23.20% |
| All Japonica | 495 | 93.54% | 6.46% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 62.20% | 37.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 207 | 82.13% | 17.87% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605273341 | G->A | INTERGENIC | None |