Detailed information of SNP:
|
SNP ID:
sf0605305585(Gbrowse)
Chromosome: chr06 Position: 5305585 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 53.71% | 46.29% |
| All Indica | 796 | 74.37% | 25.63% |
| All Japonica | 460 | 25.22% | 74.78% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 373 | 61.39% | 38.61% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 314 | 22.61% | 77.39% |
| Tropical Japonica | 85 | 37.65% | 62.35% |
| Japonica Intermediate | 61 | 21.31% | 78.69% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605305585 | C->T | LOC_Os06g10320(LOC_Os06g10320.1) | Synonymous |