Detailed information of SNP:
|
SNP ID:
sf0605310850(Gbrowse)
Chromosome: chr06 Position: 5310850 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.87% | 48.13% |
| All Indica | 798 | 25.56% | 74.44% |
| All Japonica | 496 | 86.29% | 13.71% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 38.77% | 61.23% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 19.91% | 80.09% |
| Temperate Japonica | 334 | 86.83% | 13.17% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605310850 | G->A | INTERGENIC | None |