Detailed information of SNP:
|
SNP ID:
sf0605311570(Gbrowse)
Chromosome: chr06 Position: 5311570 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 96.03% | 3.97% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 396 | 91.16% | 8.84% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 271 | 97.05% | 2.95% |
| Tropical Japonica | 74 | 72.97% | 27.03% |
| Japonica Intermediate | 51 | 86.27% | 13.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605311570 | G->A | INTERGENIC | None |