Detailed information of SNP:



SNP ID: sf0605320615(Gbrowse)

Chromosome: chr06

Position: 5320615
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1186 80.69% 19.31%
All Indica685 98.39% 1.61%
All Japonica396 52.53% 47.47%
Aus59 83.05% 16.95%
Indica I329 100.00% 0.00%
Indica II172 96.51% 3.49%
Indica Intermediate184 97.28% 2.72%
Temperate Japonica273 56.78% 43.22%
Tropical Japonica74 44.59% 55.41%
Japonica Intermediate49 40.82% 59.18%
Group VI/Aromatic14 7.14% 92.86%
Intermediate32 78.12% 21.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0605320615 T->C INTERGENIC None