Detailed information of SNP:
|
SNP ID:
sf0605320615(Gbrowse)
Chromosome: chr06 Position: 5320615 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1186 | 80.69% | 19.31% |
| All Indica | 685 | 98.39% | 1.61% |
| All Japonica | 396 | 52.53% | 47.47% |
| Aus | 59 | 83.05% | 16.95% |
| Indica I | 329 | 100.00% | 0.00% |
| Indica II | 172 | 96.51% | 3.49% |
| Indica Intermediate | 184 | 97.28% | 2.72% |
| Temperate Japonica | 273 | 56.78% | 43.22% |
| Tropical Japonica | 74 | 44.59% | 55.41% |
| Japonica Intermediate | 49 | 40.82% | 59.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 32 | 78.12% | 21.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605320615 | T->C | INTERGENIC | None |