Detailed information of SNP:
|
SNP ID:
sf0605321090(Gbrowse)
Chromosome: chr06 Position: 5321090 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 95.61% | 4.39% |
| All Indica | 788 | 99.11% | 0.89% |
| All Japonica | 462 | 90.91% | 9.09% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 368 | 100.00% | 0.00% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 311 | 97.75% | 2.25% |
| Tropical Japonica | 86 | 72.09% | 27.91% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605321090 | G->A | INTERGENIC | None |