Detailed information of SNP:
|
SNP ID:
sf0605321558(Gbrowse)
Chromosome: chr06 Position: 5321558 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 86.40% | 13.60% |
| All Indica | 799 | 77.97% | 22.03% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 63.47% | 36.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605321558 | A->G | INTERGENIC | None |