Detailed information of SNP:
|
SNP ID:
sf0605329242(Gbrowse)
Chromosome: chr06 Position: 5329242 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 95.34% | 4.66% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 90.49% | 9.51% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605329242 | G->A | LOC_Os06g10370(LOC_Os06g10370.1) | Non-Synonymous SNP |