Detailed information of SNP:
|
SNP ID:
sf0605331136(Gbrowse)
Chromosome: chr06 Position: 5331136 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 92.02% | 7.98% |
| All Indica | 776 | 86.08% | 13.92% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 354 | 77.40% | 22.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605331136 | G->A | INTERGENIC | None |