Detailed information of SNP:
|
SNP ID:
sf0605342436(Gbrowse)
Chromosome: chr06 Position: 5342436 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 85.92% | 14.08% |
| All Indica | 795 | 99.25% | 0.75% |
| All Japonica | 495 | 72.12% | 27.88% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 63.66% | 36.34% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605342436 | C->T | INTERGENIC | None |