Detailed information of SNP:
|
SNP ID:
sf0605414118(Gbrowse)
Chromosome: chr06 Position: 5414118 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 57.58% | 42.42% |
| All Indica | 796 | 77.26% | 22.74% |
| All Japonica | 494 | 29.55% | 70.45% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 374 | 61.23% | 38.77% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 332 | 10.24% | 89.76% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0605414118 | G->A | INTERGENIC | None |